Chromosome 17

Maximum LOD scores, breakage probability and distance estimates

This table lists: 1) each locus pair, 2) the number of hybrids typed for both loci, 3) number of hybrids typed that are negative for both loci, 4) number of hybrids that are negative for the first locus and positive for the second locus, 5) number of hybrids that are positive for the first locus and negative for the second locus, 6) number of hybrids that are positive for both loci, 7) estimates of the breakage probablility, 8) distance (in Rays) between both loci, and 9) maximum lod scores.

Locus names are abbreviated to the last three or four numbers. For example: SWR3456 is listed as 3456, SWR456 is denoted R456 etc. 


                    BOTH                                               LOD
  LOCUS1  LOCUS2    TYPED    --    -+    +-    ++    P(BR)     DIST   SCORE

    335    1891      117     82    16     7    12     .599     .914    3.27
    335    1004      118     81    18     7    12     .630     .995    2.83
    335      24      117     81    17     9    10     .692    1.177    1.94
    335    1120      118     85    14    10     9     .685    1.154    2.00
    335    1133      113     73    21    10     9     .798    1.599     .83
    335     296      114     70    26    11     7     .930    2.666     .10
    335    2142      117     73    25    10     9     .845    1.867     .51
    335    2441      118     79    20    10     9     .775    1.490    1.07
    335    1920      115     70    27    14     4    1.000     INF      .00
    335    1031      118     76    23    15     4    1.000     INF      .00
    335     332      117     64    34     9    10     .929    2.643     .11
    335    2431      118     68    31     9    10     .887    2.177     .28
    335    2427      117     79    19    13     6     .891    2.213     .26
    335    ENDO      118     74    25    14     5    1.000     INF      .00
    335    CST3      118     84    15    12     7     .789    1.556     .92

   1891    1004      117     87     2     1    27     .065     .068   22.36
   1891      24      116     78    11    11    16     .514     .723    4.95
   1891    1120      117     77    12    17    11     .715    1.254    1.70
   1891    1133      112     66    18    16    12     .778    1.506    1.00
   1891     296      113     63    23    17    10     .901    2.310     .20
   1891    2142      116     65    23    18    10     .905    2.358     .19
   1891    2441      117     70    19    18    10     .849    1.892     .48
   1891    1920      114     67    20    16    11     .822    1.724     .66
   1891    1031      117     68    21    22     6    1.000     INF      .00
   1891     332      116     60    28    13    15     .819    1.707     .69
   1891    2431      117     63    26    13    15     .787    1.546     .96
   1891    2427      116     71    17    20     8     .899    2.292     .22
   1891    ENDO      117     69    20    18    10     .863    1.985     .40
   1891    CST3      117     80     9    15    13     .596     .906    3.37

   1004      24      117     78    10    12    17     .499     .692    5.36
   1004    1120      118     77    11    18    12     .692    1.178    2.00
   1004    1133      113     67    17    16    13     .742    1.357    1.36
   1004     296      114     64    21    17    12     .831    1.776     .59
   1004    2142      117     64    23    19    11     .896    2.262     .23
   1004    2441      118     69    19    20    10     .873    2.067     .35
   1004    1920      115     67    19    17    12     .800    1.608     .84
   1004    1031      118     67    21    24     6    1.000     INF      .00
   1004     332      117     61    26    12    18     .732    1.318    1.53
   1004    2431      118     64    24    13    17     .728    1.301    1.60
   1004    2427      117     70    17    22     8     .922    2.553     .13
   1004    ENDO      118     68    20    20    10     .887    2.177     .28
   1004    CST3      118     79     9    17    13     .627     .986    2.92

     24    1120      117     81     9    14    13     .579     .866    3.64
     24    1133      112     73    13    10    16     .537     .770    4.39
     24     296      113     69    18    12    14     .680    1.138    2.11
     24    2142      116     67    22    16    11     .844    1.861     .51
     24    2441      117     72    18    17    10     .822    1.727     .67
     24    1920      114     72    16    12    14     .647    1.040    2.58
     24    1031      117     69    21    21     6    1.000     INF      .00
     24     332      116     60    29    13    14     .848    1.882     .49
     24    2431      117     65    25    12    15     .758    1.420    1.24
     24    2427      116     71    18    21     6     .979    3.858     .01
     24    ENDO      117     72    18    16    11     .787    1.545     .96
     24    CST3      117     80    10    16    11     .669    1.105    2.25

   1120    1133      113     78    12     5    18     .403     .516    7.44
   1120     296      114     73    19     8    14     .631     .997    2.81
   1120    2142      117     72    22    11    12     .752    1.396    1.30
   1120    2441      118     77    18    12    11     .728    1.301    1.56
   1120    1920      115     73    20    11    11     .748    1.377    1.32
   1120    1031      118     75    20    16     7     .909    2.393     .18
   1120     332      117     63    31    10    13     .847    1.874     .50
   1120    2431      118     71    24     6    17     .625     .980    3.06
   1120    2427      117     78    16    14     9     .776    1.498    1.04
   1120    ENDO      118     76    19    12    11     .742    1.355    1.41
   1120    CST3      118     85    10    11    12     .564     .829    3.85

   1133     296      109     74     6     5    24     .241     .276   12.79
   1133    2142      112     68    14    12    18     .560     .821    4.04
   1133    2441      113     72    11    13    17     .538     .773    4.45
   1133    1920      110     67    14    15    14     .670    1.109    2.18
   1133    1031      113     63    20    24     6    1.000     INF      .00
   1133     332      112     56    27    14    15     .832    1.785     .57
   1133    2431      113     63    20    11    19     .625     .982    2.95
   1133    2427      112     69    14    20     9     .843    1.850     .50
   1133    ENDO      113     68    15    17    13     .728    1.300    1.52
   1133    CST3      113     75     8    17    13     .618     .962    2.95

    296    2142      113     67    13    12    21     .508     .710    5.20
    296    2441      114     72     9    14    19     .495     .684    5.44
    296    1920      111     66    12    15    18     .578     .863    3.68
    296    1031      114     64    17    23    10     .898    2.281     .22
    296     332      113     56    25    15    17     .787    1.547     .92
    296    2431      114     61    20    13    20     .643    1.030    2.70
    296    2427      113     68    13    21    11     .796    1.588     .86
    296    ENDO      114     68    13    16    17     .617     .960    3.09
    296    CST3      114     70    11    22    11     .779    1.509    1.01

   2142    2441      117     82     1     6    28     .142     .154   18.48
   2142    1920      115     64    17    20    14     .779    1.511    1.02
   2142    1031      117     67    16    23    11     .855    1.934     .45
   2142     332      116     53    29    19    15     .920    2.520     .13
   2142    2431      117     58    25    18    16     .830    1.773     .61
   2142    2427      116     68    15    23    10     .865    2.004     .38
   2142    ENDO      117     69    14    18    16     .671    1.111    2.33
   2142    CST3      117     75     8    20    14     .642    1.026    2.71

   2441    1920      115     67    19    17    12     .800    1.608     .84
   2441    1031      118     73    16    18    11     .785    1.535     .99
   2441     332      117     55    33    18    11    1.000     INF      .00
   2441    2431      118     62    27    15    14     .841    1.841     .54
   2441    2427      117     72    17    20     8     .897    2.269     .23
   2441    ENDO      118     71    18    17    12     .779    1.508    1.05
   2441    CST3      118     80     9    16    13     .611     .944    3.16

   1920    1031      115     68    16    20    11     .819    1.711     .68
   1920     332      114     56    27    14    17     .799    1.603     .83
   1920    2431      115     63    21    12    19     .651    1.054    2.59
   1920    2427      114     71    13    19    11     .764    1.445    1.14
   1920    ENDO      115     73    11    12    19     .494     .681    5.51
   1920    CST3      115     74    10    19    12     .697    1.195    1.89

   1031     332      117     60    30    13    14     .858    1.955     .42
   1031    2431      118     65    26    12    15     .770    1.470    1.14
   1031    2427      117     74    16    18     9     .832    1.783     .60
   1031    ENDO      118     72    19    16    11     .798    1.602     .87
   1031    CST3      118     77    14    19     8     .842    1.847     .53

    332    2431      117     65     8    11    33     .326     .395   11.14
    332    2427      116     63    10    28    15     .775    1.494    1.06
    332    ENDO      117     60    13    27    17     .774    1.487    1.08
    332    CST3      117     65     8    30    14     .788    1.552     .95

   2431    2427      117     68     9    24    16     .685    1.157    2.12
   2431    ENDO      118     66    11    22    19     .644    1.034    2.76
   2431    CST3      118     71     6    25    16     .654    1.060    2.59

   2427    ENDO      117     73    19    15    10     .808    1.652     .78
   2427    CST3      117     79    13    17     8     .803    1.625     .81

   ENDO    CST3      118     78    10    18    12     .677    1.130    2.19
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